HsaALTA1057403-4/4 @ hg38
Alternative 3'ss
Gene
ENSG00000224020 | MIR181A2HG
Description
MIR181A2 host gene [Source:HGNC Symbol;Acc:HGNC:37188]
Coordinates
chr9:124658467-124698424:+
Coord C1 exon
chr9:124658467-124658741
Coord A exon
chr9:124698245-124698323
Coord C2 exon
chr9:124698324-124698424
Length
79 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
CTACTCTGGTTTCTCTTCAGATC
3' ss Score
10.95
Exon sequences
Seq C1 exon
CCTCGTCTAGCCTGGGTTCCAGTATCTAATTTTTTTTTTGTTTTAACTGACAAACTCATTTCTCTACTGGGACAGGATGCTGTGCTGGCTGGAAGTTCCATTTCTACAGCAAGAATCCTATCTGGAAACACAGAAGTTGTCCTCTAGCCACAGCAGCTCGAACTTTTTTGATTGTCGTTGCTGCTTTCTCCCATCACCCCCATCCCCTTTTGACAAAGATCCAACTGTAAAAAGTCTTACGTAACAGTTCAGGACTACTTCGGTTCTTTTACTGG
Seq A exon
ATCATATAAATCTTTCGCCTTTTAAATCATGTATTAAAAAAAAAGAAAAAGGAAAAACAAAGATTTCTTTTAGATGCAG
Seq C2 exon
AATCTACCTACATTCGGCTGAAAATCAGATGGAAGAATCCACAGAGGAAAGGAAGGAAAGGCGAACTGTCCTGTGGAAAGCACAGCTGCAGGGATAGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000224020-0-7,0-6,0-5,0-4-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTGCTGCTTTCTCCCATC
R:
TGCTTTCCACAGGACAGTTCG
Band lengths:
183-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains