HsaALTA0005822-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000148200 | NR6A1
Description
nuclear receptor subfamily 6 group A member 1 [Source:HGNC Symbol;Acc:HGNC:7985]
Coordinates
chr9:124554328-124733349:-
Coord C1 exon
chr9:124733308-124733349
Coord A exon
NA
Coord C2 exon
chr9:124554328-124554558
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
ATGATCAGTTTCTGTTTCAGATG
3' ss Score
8.54
Exon sequences
Seq C1 exon
GTTTCTGTCAGGATGAATTGGCAGAGCTTGACCCAGGCACTA
Seq A exon
NA
Seq C2 exon
ATGATCGGGCTGAACAACGAACCTGTCTCATTTGTGGGGACCGCGCTACAGGCTTGCACTATGGGATCATCTCCTGTGAGGGCTGCAAAGGGTTTTTCAAGCGGAGCATTTGCAACAAACGGGTATATCGATGCAGTCGTGACAAGAACTGTGTCATGTCTCGGAAGCAGAGGAACAGGTGCCAGTACTGCCGCCTGCTCAAATGCCTCCAGATGGGGATGAACCGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148200-8-14,8-13-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.248 A=NA C2=0.026
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010513=zf-C4=WD(100=89.7)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGCAGAGCTTGACCCAG
R:
CCCATAGTGCAAGCCTGTAGC
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development