HsaEX0044722 @ hg19

Exon Skipping

Gene

ENSG00000173391 | OLR1

Description

oxidized low density lipoprotein (lectin-like) receptor 1 [Source:HGNC Symbol;Acc:8133]

Coordinates

chr12:10312946-10319556:-

Coord C1 exon

chr12:10319311-10319556

Coord A exon

chr12:10313385-10313524

Coord C2 exon

chr12:10312946-10313061

Length

140 bp

Sequences

Splice sites

3' ss Seq

AGATATACTATCCTTCCCAGCTC

3' ss Score

3.59

5' ss Seq

CTGGTGAGT

5' ss Score

10.1

Exon sequences

Seq C1 exon

TATCCCAGGTGTCTGACCTCCTAACACAAGAGCAAGCAAACCTAACTCACCAGAAAAAGAAACTGGAGGGACAGATCTCAGCCCGGCAACAAGCAGAAGAAGCTTCACAGGAGTCAGAAAACGAACTCAAGGAAATGATAGAAACCCTTGCTCGGAAGCTGAATGAGAAATCCAAAGAGCAAATGGAACTTCACCACCAGAATCTGAATCTCCAAGAAACACTGAAGAGAGTAGCAAATTGTTCAG

Seq A exon

CTCCTTGTCCGCAAGACTGGATCTGGCATGGAGAAAACTGTTACCTATTTTCCTCGGGCTCATTTAACTGGGAAAAGAGCCAAGAGAAGTGCTTGTCTTTGGATGCCAAGTTGCTGAAAATTAATAGCACAGCTGATCTG

Seq C2 exon

GACTTCATCCAGCAAGCAATTTCCTATTCCAGTTTTCCATTCTGGATGGGGCTGTCTCGGAGGAACCCCAGCTACCCATGGCTCTGGGAGGACGGTTCTCCTTTGATGCCCCACTT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000173391_MULTIEX1-2/3=1-3

Average complexity

S

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show PDB structure

Features

Disorder rate (Iupred):

C1=0.349 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF083915=Ly49=FE(64.6=100),PF108283=DUF2570=PD(74.0=92.8),PF145841=DUF4446=PD(75.7=94.0),PF043759=HemX=FE(54.3=100),PF148511=FAM176=PD(77.7=96.4),PF078897=DUF1664=PD(74.8=96.4),PF055297=Bap31=PD(81.5=90.4),PF130941=CENP-Q=FE(66.7=100),PF0149614=V_ATPase_I=FE(61.2=100),PF054737=Herpes_UL45=PU(17.2=12.0)

A:

PF083915=Ly49=PD(12.6=34.0),PF043759=HemX=PD(8.6=27.7),PF130941=CENP-Q=PD(30.9=80.9),PF0149614=V_ATPase_I=PD(31.3=89.4),PF054737=Herpes_UL45=FE(79.3=100)

C2:

PF083915=Ly49=PD(2.6=7.7),PF039389=OmpH=PD(0.1=0.0),PF041117=APG6=PD(6.4=17.9)

Main Inclusion Isoform:

ENSP00000309124