HsaEX0044722 @ hg38

Exon Skipping

Gene

ENSG00000173391 | OLR1

Description

oxidized low density lipoprotein receptor 1 [Source:HGNC Symbol;Acc:HGNC:8133]

Coordinates

chr12:10160347-10166957:-

Coord C1 exon

chr12:10166712-10166957

Coord A exon

chr12:10160786-10160925

Coord C2 exon

chr12:10160347-10160462

Length

140 bp

Sequences

Splice sites

3' ss Seq

AGATATACTATCCTTCCCAGCTC

3' ss Score

3.59

5' ss Seq

CTGGTGAGT

5' ss Score

10.1

Exon sequences

Seq C1 exon

TATCCCAGGTGTCTGACCTCCTAACACAAGAGCAAGCAAACCTAACTCACCAGAAAAAGAAACTGGAGGGACAGATCTCAGCCCGGCAACAAGCAGAAGAAGCTTCACAGGAGTCAGAAAACGAACTCAAGGAAATGATAGAAACCCTTGCTCGGAAGCTGAATGAGAAATCCAAAGAGCAAATGGAACTTCACCACCAGAATCTGAATCTCCAAGAAACACTGAAGAGAGTAGCAAATTGTTCAG

Seq A exon

CTCCTTGTCCGCAAGACTGGATCTGGCATGGAGAAAACTGTTACCTATTTTCCTCGGGCTCATTTAACTGGGAAAAGAGCCAAGAGAAGTGCTTGTCTTTGGATGCCAAGTTGCTGAAAATTAATAGCACAGCTGATCTG

Seq C2 exon

GACTTCATCCAGCAAGCAATTTCCTATTCCAGTTTTCCATTCTGGATGGGGCTGTCTCGGAGGAACCCCAGCTACCCATGGCTCTGGGAGGACGGTTCTCCTTTGATGCCCCACTT

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000173391_MULTIEX1-4/5=3-5

Average complexity

C1

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

Show PDB structure

Features

Disorder rate (Iupred):

C1=0.364 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF039389=OmpH=FE(56.2=100),PF101864=Atg14=FE(53.9=100),PF083915=Ly49=FE(70.1=100),PF145841=DUF4446=FE(75.9=100),PF148511=FAM176=PD(77.9=97.6),PF041117=APG6=FE(66.7=100)

A:

PF043759=HemX=PD(8.6=27.7),PF083915=Ly49=PD(12.6=34.0),PF130941=CENP-Q=PD(30.9=80.9),PF054737=Herpes_UL45=FE(79.3=100)

C2:

PF083915=Ly49=PD(2.6=7.7),PF041117=APG6=PD(6.4=17.9)

Main Inclusion Isoform:

ENSP00000309124