BtaEX6024000 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004547 | OLR1
Description
Bos taurus oxidized low density lipoprotein (lectin-like) receptor 1 (OLR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174132]
Coordinates
chr5:100247851-100253850:+
Coord C1 exon
chr5:100247851-100248096
Coord A exon
chr5:100253275-100253414
Coord C2 exon
chr5:100253735-100253850
Length
140 bp
Sequences
Splice sites
3' ss Seq
AGATATACTATATTTCCTAGGTC
3' ss Score
5.44
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
TATCCCAGGTCTCTGATCTCATAAAGAAACAGCAAGCAAATATTACTCACCAGGAAGATATCCTGGAGGGACAGATTTTAGCCCAGCGCCGATCAGAAAAATCTGCCCAGGAGTCACAGAAGGAACTCAAAGAAATGATAGAAACCCTTGCCCACAAGCTGGATGAGAAATCCAAGAAACTAATGGAACTTCACCGCCAGAACCTGAATCTCCAAGAAGTTCTGAAAGAGGCAGCAAACTATTCAG
Seq A exon
GTCCTTGTCCCCAAGACTGGCTCTGGCATGAAGAAAACTGTTACCAATTTTCCTCTGGCTCTTTTAATTGGGAAAAAAGCCAGGAGAACTGCTTGTCTTTGGATGCCCACTTGCTGAAGATTAATAGCACAGATGAACTG
Seq C2 exon
GAATTCATCCAGCAAACAATTGCCCATTCCAGTTTCCCCTTCTGGATGGGGTTGTCAATGAGGAAACCCAATTACTCGTGGCTTTGGGAAGATGGTACTCCTTTGACGCCCCACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004547-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.084 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083915=Ly49=FE(64.6=100),PF041569=IncA=FE(50.9=100),PF0055814=Vpu=PD(72.8=80.7),PF145841=DUF4446=PD(74.5=84.3),PF148511=FAM176=PD(77.5=95.2)
A:
PF083915=Ly49=PD(12.6=34.0),PF041569=IncA=FE(28.6=100),PF0005916=Lectin_C=PU(25.5=57.4)
C2:
PF041569=IncA=PD(3.1=12.8),PF0005916=Lectin_C=FE(35.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGCCCAGGAGTCACAGAA
R:
GGGCGTCAAAGGAGTACCATC
Band lengths:
257-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]