RnoEX0062249 @ rn6
Exon Skipping
Gene
ENSRNOG00000056219 | Olr1
Description
oxidized low density lipoprotein receptor 1 [Source:RGD Symbol;Acc:620515]
Coordinates
chr4:163242838-163248527:-
Coord C1 exon
chr4:163248390-163248527
Coord A exon
chr4:163244105-163244241
Coord C2 exon
chr4:163242838-163242953
Length
137 bp
Sequences
Splice sites
3' ss Seq
TATATGCTAACACTTCCTAGGTC
3' ss Score
5.52
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
AGGAGTCCCAGAGAGAACTGAAGGAACAGATAGACACCCTCAGCTGGAAGCTAAACGAGAAATCCAAAGAGCAGGAGGAGCTTCTGCAGCAGAATCAGAATCTTCAAGAAGCCCTGCAGAGAGCTGCAAACTCTTCAG
Seq A exon
GTCCTTGTCCACAAGACTGGATCTGGCATAAAGAAAACTGTTACCTCTTCCATGGGCCCTTTAACTGGGAAAAAAGTCGGGAGAATTGCCTATCTTTAGATGCCCAGTTACTACAAATTAGTACCACAGATGATCTG
Seq C2 exon
AACTTCGTCTTACAAGCAACTTCCCATTCCACCTCCCCATTTTGGATGGGATTACATCGGAAAAATCCCAACCACCCATGGCTATGGGAGAACGGCTCTCCTTTGAGTTTTCAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056219_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083176=Spc7=FE(39.7=100)
A:
PF083176=Spc7=PD(4.3=10.9),PF0005916=Lectin_C=PU(24.8=56.5)
C2:
PF0005916=Lectin_C=FE(36.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTCCCAGAGAGAACTGA
R:
AACTCAAAGGAGAGCCGTTCT
Band lengths:
247-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]