HsaEX0045047 @ hg19
Exon Skipping
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD-binding domain containing 1 [Source:HGNC Symbol;Acc:25128]
Coordinates
chr3:16313166-16327955:+
Coord C1 exon
chr3:16313166-16313229
Coord A exon
chr3:16313652-16313828
Coord C2 exon
chr3:16327849-16327955
Length
177 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCATTCCTGCTTTAGAGC
3' ss Score
8.95
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
CATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGGGAG
Seq A exon
AGCAACTTATTTCATCAAGGGAGAAAGCACTAACATCTGAGAAAGGAAAGTGGACGAGCTCTTGTTACCCTTCTAATGTACAGATTTTTTCCACCATATTCAGACTATAGAAAGCTAATCTACCACCTGAAGGGGTGTCAAGGGCTGAGAAATAAAGGATCCTCACCCTTTACCTCA
Seq C2 exon
ATTGTGTCAGCAGCTAAGGTGTGTGGAGCTGCCAGTGAGTCACCGTCAGTGAAGAGCCTCCGCTTGCTTGTTGCTGATCAAGACTTTTCCTTTAAAGCTGGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814_MULTIEX1-2/4=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.500 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0097019=FAD_binding_6=PU(36.0=88.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAAAGGAAAACTGATCACATGG
R:
CACTGGCCAGCTTTAAAGGAA
Band lengths:
162-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)