BtaEX0025599 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004891 | OXNAD1
Description
Bos taurus oxidoreductase NAD-binding domain containing 1 (OXNAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035090]
Coordinates
chr1:155020421-155035442:+
Coord C1 exon
chr1:155020421-155020484
Coord A exon
chr1:155020889-155021064
Coord C2 exon
chr1:155035336-155035442
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGTTCTTCTCCCTACTTTAGAAC
3' ss Score
10.53
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
Exon sequences
Seq C1 exon
TGTAATGAAATCCAAAAGGAGACCTGATCACTTGGAGAGAACTGCAGATGTCGTTCGCCAGGAG
Seq A exon
AACAACTTATTTCATCAAAAGGGAGAAAGCACTGACATCTGAGAAAGGAGGGTGAATGAGCTCTCTTACCTTCCCATGTGCAGATTTTCCTCCATATTCAGACCACGGAAGGGCTAATCCACCAACCCGAAGGGGTTCACGGGCTGGGGAATAAAGGATCCTCACCCGTTACCTCC
Seq C2 exon
GTCGTTTCGGCAGCCAAGGTGTGTGGAGTGGCTAGCGAGTCCCCATCGGTGAAGAGGCTCTGCCTGCTCGTCGCCGATAAAGACTTTTCTTTTAAGGCCGGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004891_MULTIEX1-4/6=3-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.385 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000006434fB4945
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAATGAAATCCAAAAGGAGACCTG
R:
CACTGGCCGGCCTTAAAAGAA
Band lengths:
171-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development