BtaEX0025598 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004891 | OXNAD1
Description
Bos taurus oxidoreductase NAD-binding domain containing 1 (OXNAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035090]
Coordinates
chr1:155019987-155035442:+
Coord C1 exon
chr1:155019987-155020104
Coord A exon
chr1:155020421-155020484
Coord C2 exon
chr1:155035336-155035442
Length
64 bp
Sequences
Splice sites
3' ss Seq
AATTTTACTTTTTATTAAAGTGT
3' ss Score
3.56
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GAAGCACCATGGTGGTCGTGATCCCCAGGCTGCTGCGAGGCTCTCTGGGCGCCATCTGCACTCAGGCGGCTCTGCTGAGATCAACACCCAGTGCGTTTCGCTACCTCACTCGGAGCAG
Seq A exon
TGTAATGAAATCCAAAAGGAGACCTGATCACTTGGAGAGAACTGCAGATGTCGTTCGCCAGGAG
Seq C2 exon
GTCGTTTCGGCAGCCAAGGTGTGTGGAGTGGCTAGCGAGTCCCCATCGGTGAAGAGGCTCTGCCTGCTCGTCGCCGATAAAGACTTTTCTTTTAAGGCCGGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004891_MULTIEX1-3/6=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.303 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGATCAACACCCAGTGCGTT
R:
ACTGGCCGGCCTTAAAAGAAA
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development