DreEX6072824 @ danRer10
Exon Skipping
Gene
ENSDARG00000062664 | oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-199]
Coordinates
chr19:20690506-20692667:+
Coord C1 exon
chr19:20690506-20690643
Coord A exon
chr19:20690826-20690889
Coord C2 exon
chr19:20692561-20692667
Length
64 bp
Sequences
Splice sites
3' ss Seq
CGACCCTAAATGTGTTTCAGAAA
3' ss Score
7.16
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGTTTGACAGAGTTCCTCCCGTCACATCTGACCATGAGTGCCCCGTGCTTTGTACGAACGGTGGCCAGAGGTTTCTCCGGTGGATCAGGACTGTTCAGACCTGCTGTGTTGTGTTCAGACAAAGTCACAGTCACACG
Seq A exon
AAAAATGACATCCAGGAGACGGACTGACCATCTAGAGAGAACTGCTAGTGTTCATCGACAAATG
Seq C2 exon
GAACTTTTCTCTGCACGTGTTTGTGACATTATTAGTGAATCTGATACTGTAAAGAGACTAAGACTGGAAGTGGCTCATCCTGACTTCAGCTTCCGTGCTGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062664-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.516 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0097019=FAD_binding_6=PU(33.7=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTGTTCAGACCTGCTGT
R:
GCTGAAGTCAGGATGAGCCAC
Band lengths:
141-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]