GgaEX0016903 @ galGal3
Exon Skipping
Gene
ENSGALG00000011239 | OXNAD1
Description
NA
Coordinates
chr2:34257093-34260364:+
Coord C1 exon
chr2:34257093-34257255
Coord A exon
chr2:34257522-34257585
Coord C2 exon
chr2:34260258-34260364
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGCTTCTTGTTGCAGCAC
3' ss Score
9.57
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
Exon sequences
Seq C1 exon
GAGCTGGTGATTCTAAAGACAGCCTGGTTATCATGGCTCGTGTTACCACATACATGGGCTTTACTATTCCTCACTTACTGAGAAGTGCCTGCAGACTTTGTCCTGCTCATTCTGCACTGGTGGCGTTGAGGCACTCTGCTTCTTGTTACTGTACAGCGAATGG
Seq A exon
CACAATACAATCAAAAAGGAAAATGGATCACCTTGAGAGAACAGCAAATAATTTTCGCCAGGAG
Seq C2 exon
GTAATTTCACAAGCCAAAGTGTGTGGCATCACCAATGAATCAGAGACAGTCAAGAGACTACGTTTGGCCATCACAAATAAAGATTTTACTTTCAAAGCGGGACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0097019=FAD_binding_6=PU(34.8=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGCTCATTCTGCACTGG
R:
TGTGATGGCCAAACGTAGTCT
Band lengths:
139-203
Functional annotations
There are 0 annotated functions for this event