RnoEX6054850 @ rn6
Exon Skipping
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8212532-8215921:+
Coord C1 exon
chr16:8212532-8212652
Coord A exon
chr16:8212957-8213020
Coord C2 exon
chr16:8215815-8215921
Length
64 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTTCTTTTAAAAAGCGT
3' ss Score
6.54
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GCAGCACCATGGCCCATGTCTTGATTCCTGGGTTGTCTCGAGGCTCTGTGGGAGCCATCTGCACTCAGGCTGCTTCGTGGGCACTGCCTACCAGCACTCTGCGTTCCCTTACCTTAGCCAG
Seq A exon
CGTAATGAGATCCAGAAGGAAAACTGACCACCTAGAGAGAACCGCCACTGTCCTCCGCCGGGAG
Seq C2 exon
GTCATGGCTGCAGCTAAGGTGTGTGAGATCACTCACGAGTCTCCATCAGTGAAGAGCCTCCGTTTGCTTGTTGCTGATAAAGACTTTTCCTTCAAGGCTGGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760-'4-7,'4-3,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0097019=FAD_binding_6=PU(43.8=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCATGTCTTGATTCCTGGG
R:
CTCACACACCTTAGCTGCAGC
Band lengths:
137-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]