BtaALTA0020962-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004891 | OXNAD1
Description
Bos taurus oxidoreductase NAD-binding domain containing 1 (OXNAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035090]
Coordinates
chr1:155020421-155021064:+
Coord C1 exon
chr1:155020421-155020484
Coord A exon
chr1:155020889-155020971
Coord C2 exon
chr1:155020972-155021064
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
TGTTCTTCTCCCTACTTTAGAAC
3' ss Score
10.53
Exon sequences
Seq C1 exon
TGTAATGAAATCCAAAAGGAGACCTGATCACTTGGAGAGAACTGCAGATGTCGTTCGCCAGGAG
Seq A exon
AACAACTTATTTCATCAAAAGGGAGAAAGCACTGACATCTGAGAAAGGAGGGTGAATGAGCTCTCTTACCTTCCCATGTGCAG
Seq C2 exon
ATTTTCCTCCATATTCAGACCACGGAAGGGCTAATCCACCAACCCGAAGGGGTTCACGGGCTGGGGAATAAAGGATCCTCACCCGTTACCTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004891-3-5,3-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAATCCAAAAGGAGACCTGA
R:
GAGGTAACGGGTGAGGATCCT
Band lengths:
151-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development