BtaEX0025597 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004891 | OXNAD1
Description
Bos taurus oxidoreductase NAD-binding domain containing 1 (OXNAD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035090]
Coordinates
chr1:155003594-155035442:+
Coord C1 exon
chr1:155003594-155010352
Coord A exon
chr1:155019987-155020104
Coord C2 exon
chr1:155035336-155035442
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTGAGTTTGCTGTCTCCCAGGAA
3' ss Score
7.37
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CATGGAGATGGCGGCTCTAGGGGGCGGAGACACGGGCGAATAGGACTCGCGGCTCGGGGTCGATCGAGCGTCGCTCCGCCCATCGGGCGACAGCAACCAATGGCATGTGGGTTTCTCTCACGCGCCTGTGCGTCACTTCGGGGACGCCGGAAGCTCTCCAGAGCCGGGGCGGAGCTTGGCGCTGCGCAAGGGCCGGGTCGGCGCGGGGGTGGCGGCGGTGTGGAGACTCCCGATTGAGGCGTAGTGTCCCGTGTCTCACGTCCGTGGGCCTCAGGCCTTAAGCAGACTCCGTAGGAGGCCCCGGTCGGCCTAGGTAGCGTCAGCCCGGCCCTTGGCGCCGCTGGCGGAAAGCGCTTTGCGGGGTGAGAGGCAGCGGCGGGAACTGCTCAGCCCCCTGGACCTCCCCGGTGAGGGACGGAAAGCTGAGGTCTTGATTCACCGAGTGACTTTAAGCTCCGAGCGGCGCGTGGCTTGTGATCGGGCCGCGCTCGGCTGTCCAG
Seq A exon
GAAGCACCATGGTGGTCGTGATCCCCAGGCTGCTGCGAGGCTCTCTGGGCGCCATCTGCACTCAGGCGGCTCTGCTGAGATCAACACCCAGTGCGTTTCGCTACCTCACTCGGAGCAG
Seq C2 exon
GTCGTTTCGGCAGCCAAGGTGTGTGGAGTGGCTAGCGAGTCCCCATCGGTGAAGAGGCTCTGCCTGCTCGTCGCCGATAAAGACTTTTCTTTTAAGGCCGGCCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004891_MULTIEX1-2/6=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCTTAAGCAGACTCCGTA
R:
CACTCCACACACCTTGGCTG
Band lengths:
258-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development