GgaEX1041625 @ galGal3
Exon Skipping
Gene
ENSGALG00000011239 | OXNAD1
Description
NA
Coordinates
chr2:34251703-34257585:+
Coord C1 exon
chr2:34251703-34251965
Coord A exon
chr2:34257093-34257255
Coord C2 exon
chr2:34257522-34257585
Length
163 bp
Sequences
Splice sites
3' ss Seq
CATTCATGTGGGTTTTTCAGGAG
3' ss Score
7.8
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GGAGGGAAAGCGTTTCGTGGTGACGATCTGTGGGCTGCGGGTGGGGAGTATCTCTCACCTGGTTTGTAAAAAGGGCTCTGTGCCGCTCCTTTGAGCGTCCCCGCTTCCCTCCCCGTTGCGTTCTGTGGTGGTTTGATCTCCAGTGCAGCGCGGGTTCGCTGAAAGGCTGTCTCTCCCTTCAGATGCACGGGTAGGACTGAGGAAAGAAGAGGCCGCAGCGGTAGATGTCATGGTGCATTAACCCGGGGCCTGTGGCTCTCAGG
Seq A exon
GAGCTGGTGATTCTAAAGACAGCCTGGTTATCATGGCTCGTGTTACCACATACATGGGCTTTACTATTCCTCACTTACTGAGAAGTGCCTGCAGACTTTGTCCTGCTCATTCTGCACTGGTGGCGTTGAGGCACTCTGCTTCTTGTTACTGTACAGCGAATGG
Seq C2 exon
CACAATACAATCAAAAAGGAAAATGGATCACCTTGAGAGAACAGCAAATAATTTTCGCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011239-'1-1,'1-0,5-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTTGTAAAAAGGGCTCTGTGC
R:
GCTGTTCTCTCAAGGTGATCCA
Band lengths:
248-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]