RnoEX0062752 @ rn6
Exon Skipping
Gene
ENSRNOG00000019760 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:RGD Symbol;Acc:1311534]
Coordinates
chr16:8207802-8213020:+
Coord C1 exon
chr16:8207802-8207902
Coord A exon
chr16:8212532-8212652
Coord C2 exon
chr16:8212957-8213020
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTTCAGTTCCATTTGCCCAGGCA
3' ss Score
4.33
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TCCTCTCCAGTCCTCCTCGACACACAGCGCTCCTGCAGTAGCGTTTCAGGCGACCTTGAGCTCTGAGTGACGCCTGGCCTGTTATGAGTTCCTGCCTGCAG
Seq A exon
GCAGCACCATGGCCCATGTCTTGATTCCTGGGTTGTCTCGAGGCTCTGTGGGAGCCATCTGCACTCAGGCTGCTTCGTGGGCACTGCCTACCAGCACTCTGCGTTCCCTTACCTTAGCCAG
Seq C2 exon
CGTAATGAGATCCAGAAGGAAAACTGACCACCTAGAGAGAACCGCCACTGTCCTCCGCCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019760-'2-3,'2-2,4-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCTCCAGTCCTCCTCGA
R:
GGACAGTGGCGGTTCTCTCTA
Band lengths:
154-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]