HsaEX6054653 @ hg38
Exon Skipping
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD binding domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25128]
Coordinates
chr3:16269126-16271722:+
Coord C1 exon
chr3:16269126-16269275
Coord A exon
chr3:16270945-16271071
Coord C2 exon
chr3:16271659-16271722
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCAGTTTTCTGTTTGCCCAGAAA
3' ss Score
4.93
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCATGTTCCAACTGCTGTACATCCAAAAGTCTCAGTGTAATAGCAGGACCAAAATATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTGGACTTCTAAG
Seq A exon
AAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAG
Seq C2 exon
CATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814-'2-7,'2-6,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGTGAGAATTTTAATGCATGGA
R:
CTCCCGTCGAAGGACACTTG
Band lengths:
212-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains