HsaEX6054653 @ hg19
Exon Skipping
Gene
ENSG00000154814 | OXNAD1
Description
oxidoreductase NAD-binding domain containing 1 [Source:HGNC Symbol;Acc:25128]
Coordinates
chr3:16310633-16313229:+
Coord C1 exon
chr3:16310633-16310782
Coord A exon
chr3:16312452-16312578
Coord C2 exon
chr3:16313166-16313229
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCAGTTTTCTGTTTGCCCAGAAA
3' ss Score
4.93
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAACTTTGTGAGAATTTTAATGCATGGAAAAGCTGTCCATGTTCCAACTGCTGTACATCCAAAAGTCTCAGTGTAATAGCAGGACCAAAATATTCTGTCAATCAGCTGACCATATACTTAATGACTCCTAAAATCTCGTGGACTTCTAAG
Seq A exon
AAAGCGCCATGGCCTGTGCTGCTGTTATGATTCCTGGGTTGTTGCGGTGCTCTGTTGGAGCCATCCGTATTGAGGCTGCGTCACTGAGATTGACACTCAGCACTTTGCGCCACCTTACTCTAACCAG
Seq C2 exon
CATAATGAAATCCAAAAGGAAAACTGATCACATGGAGAGAACTGCAAGTGTCCTTCGACGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154814-'2-6,'2-5,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
PF063668=FlhE=PU(65.2=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTGTGAGAATTTTAATGCATGGA
R:
CTCCCGTCGAAGGACACTTG
Band lengths:
212-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)