DreEX6072825 @ danRer10
Exon Skipping
Gene
ENSDARG00000062664 | oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-060503-199]
Coordinates
chr19:20690168-20690889:+
Coord C1 exon
chr19:20690168-20690235
Coord A exon
chr19:20690517-20690643
Coord C2 exon
chr19:20690826-20690889
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTTATAAGGTGTTTGACAGAGT
3' ss Score
1.09
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
CTCGAATCACCCACCGTAAACACAGACGAAGAAGAAACGTCACTCACCGGAGCAGAAGAGTGACAGAG
Seq A exon
AGTTCCTCCCGTCACATCTGACCATGAGTGCCCCGTGCTTTGTACGAACGGTGGCCAGAGGTTTCTCCGGTGGATCAGGACTGTTCAGACCTGCTGTGTTGTGTTCAGACAAAGTCACAGTCACACG
Seq C2 exon
AAAAATGACATCCAGGAGACGGACTGACCATCTAGAGAGAACTGCTAGTGTTCATCGACAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062664-'0-3,'0-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.516
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAATCACCCACCGTAAACA
R:
TTTGTCGATGAACACTAGCAGT
Band lengths:
130-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]