MmuEX6040636 @ mm9
Exon Skipping
Gene
ENSMUSG00000021906 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:MGI Symbol;Acc:MGI:1916953]
Coordinates
chr14:32899035-32905317:+
Coord C1 exon
chr14:32899035-32899239
Coord A exon
chr14:32904822-32904945
Coord C2 exon
chr14:32905254-32905317
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTCAGTTCCGTTTCCCCCAGGAA
3' ss Score
9.13
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGGAGTCTTGTCCTCCATAGCTGACTTCAGAGGACATTAAAAGAATTGGCGGAGGCTACGCCCTCTTGAAAGGGGGAATCATTGAGGCTCAGGGAGCCACACAGCGTCCTCTCCAGTTCTCGGCCCACAGCGCTCCTGCAATTGCGTTTCAGGCGACCTTGAACTCTGAGTGACTCTTGGCCTGTTATGAGTTCTTGCCTGCAG
Seq A exon
GAAGCACCATGGCCCACGTTGCCTTGATTCCTGGCTTGTCTCGAGGATCTGTGGGAGCCGTCTGCACTCAGGCTGCTTCGTGGGGACTGAAGGCCAGCACTTTGCGTCACCTTACCCTAGCCAG
Seq C2 exon
CATAATTAAATCCAGAAGGAAAACGGACCACCTAGAGAGAACTGCCAGTGTCCTCCGCCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021906-'2-8,'2-7,4-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCATAGCTGACTTCAGAGGA
R:
GGAGGACACTGGCAGTTCTCT
Band lengths:
249-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: