MmuEX6040636 @ mm10
Exon Skipping
Gene
ENSMUSG00000021906 | Oxnad1
Description
oxidoreductase NAD-binding domain containing 1 [Source:MGI Symbol;Acc:MGI:1916953]
Coordinates
chr14:32085849-32092131:+
Coord C1 exon
chr14:32085849-32086053
Coord A exon
chr14:32091636-32091759
Coord C2 exon
chr14:32092068-32092131
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTCAGTTCCGTTTCCCCCAGGAA
3' ss Score
9.13
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTGGAGTCTTGTCCTCCATAGCTGACTTCAGAGGACATTAAAAGAATTGGCGGAGGCTACGCCCTCTTGAAAGGGGGAATCATTGAGGCTCAGGGAGCCACACAGCGTCCTCTCCAGTTCTCGGCCCACAGCGCTCCTGCAATTGCGTTTCAGGCGACCTTGAACTCTGAGTGACTCTTGGCCTGTTATGAGTTCTTGCCTGCAG
Seq A exon
GAAGCACCATGGCCCACGTTGCCTTGATTCCTGGCTTGTCTCGAGGATCTGTGGGAGCCGTCTGCACTCAGGCTGCTTCGTGGGGACTGAAGGCCAGCACTTTGCGTCACCTTACCCTAGCCAG
Seq C2 exon
CATAATTAAATCCAGAAGGAAAACGGACCACCTAGAGAGAACTGCCAGTGTCCTCCGCCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021906-'1-16,'1-7,4-16=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.045
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCATAGCTGACTTCAGAGGA
R:
GGAGGACACTGGCAGTTCTCT
Band lengths:
249-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types