HsaEX0045712 @ hg38
Exon Skipping
Gene
ENSG00000007372 | PAX6
Description
paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620]
Coordinates
chr11:31806849-31811015:-
Coord C1 exon
chr11:31810828-31811015
Coord A exon
chr11:31809906-31810657
Coord C2 exon
chr11:31806849-31806925
Length
752 bp
Sequences
Splice sites
3' ss Seq
CCCAAACTTTCTACTTCCAGCGA
3' ss Score
7.14
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GAATCTGAGAATTGCTCTCACACACCAACCCAGCAACATCCGTGGAGAAAACTCTCACCAGCAACTCCTTTAAAACACCGTCATTTCAAACCATTGTGGTCTTCAAGCAACAACAGCAGCACAAAAAACCCCAACCAAACAAAACTCTTGACAGAAGCTGTGACAACCAGAAAGGATGCCTCATAAAG
Seq A exon
CGAAAGCCCGCGTCGGAGGGCGACTGCCGGCGAGCGGGAGCGGCGCAGGGCTCGGGGCGGGCGGCCAGCTCAGCCCCAGCGCCAGCGCCAGCGCCAGCGCGGGCTGAGCTCGCGGGAAGAAGGGAGACTCCAGGCGCGACAGCAGCCGCGGCTCCTAGCCCCAGCGTCGCCCAATGCTCCCGACCCGCGGGAAAAGACGAAGAGGCTCTGTGGTGCCCAAGGCCCTGGAACGGCCGCAGAGAGCAACCGCTGCCGGCTGCTTTGTCCAGCCCGAGGCCCAGCGAACGCGCAGAGAGCGGGCGCTCCGAGGACTCGCCGAGGGAGCGCCGAGGGAACCTGCTCGCCGCGTCTCCGCCCGCCCGCCGGCCCTCGGGCTTTGTGCCGCACTGGGCTCCGGCGCAGAAGAGTCAGCCGGCACTCGAGCGCCGAGGGGGGCACCGCGCCCGCCACCAGCCCGAGTGGAGTCAGTCGGCAAGGCAGCCGCACGCTGGAGGTAGAGGGAAGAGCGAGCTAGCGCGAGCCGGGAAGGAAGCCACCAGGCCAAGGCGGTGGAACGCGCGCTCCGAGGGAGCTCAGAGCCGAGCGGGAGGACTGTCAGCTTCCACCCAGCCCCCGGGCTCTTGCCCCCAACTCCACTGGAGCGCTGAGCTCGGAACTTGAAAACTCTCTGCTCCCCAGGCTTCCCCCGACTCTCATCTCCCTTGCCTTGCGGAGGCTGGGGCTCTTCCCTGTTCTCCGGCCCCCTGCGCTTG
Seq C2 exon
GGGGAAGACTTTAACTAGGGGCGCGCAGATGTGTGAGGCCTTTTATTGTGAGAGTGGACAGACATCCGAGATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007372_MULTIEX1-2/10=1-3
Average complexity
S
Mappability confidence:
90%=100=90%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0029213=PAX=PU(0.1=0.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCTCTCACACACCAACCC
R:
TGAAATCTCGGATGTCTGTCCAC
Band lengths:
254-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development