RnoEX0063598 @ rn6
Exon Skipping
Gene
ENSRNOG00000004410 | Pax6
Description
paired box 6 [Source:RGD Symbol;Acc:3258]
Coordinates
chr3:95707386-95711253:+
Coord C1 exon
chr3:95707386-95707413
Coord A exon
chr3:95707578-95708275
Coord C2 exon
chr3:95711173-95711253
Length
698 bp
Sequences
Splice sites
3' ss Seq
CCCAAACTTTCTACTTCCAGCGA
3' ss Score
7.14
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GCGACGAAAGAGAGGATGCCTCTTAAAG
Seq A exon
CGAAAGCCCGCGTCGGAGGGCGACGGTTCGCGAGCCGCAGCAGCGCGGAGCTCGGGGCAGCCGGCTGGCTCTGCACCAGCGCAAGTGCGGCTGAACCTCTCCGAGAGCAGCTAGGCTGCAGGGCGCCCCCGCAAACCGCAGCTCTCGGCTTCAGCGCCTCCAAAAGCTCACGGTCAGCCGAAAAGGACGAAGAGGCTCCTCCGTGCCCCAGGCCGCGGAGAGCAGCCACCGGCGATGCTTTTGTCCAGCCCCGGCCGAGCCAGCGCGCAGAGAGCGCCCAACCAGCCGACTCTCCGCGCCGCCTCCCGCCAGTCCGCGCTCCGGCTTTGTGCAAGATCCTCCGGGGCCCAGAACTGCCCGCAGCGCCAAAGGGTCATCGCGCCCTCCGCTAGCCGGAGCCGACTGGATGGGCATCACGGCCGGCCGTGCGCCCGAGGCCACGAGGAACTGGGAGCGAGCGCGGGCGGTGAAGGAAGCCGCTAGGCCGAGGCGGTCGGACCCGCTCTCCGAGGGAGTTCCGAGCCAATCCCAAGGACTGCCAGCTTCTATCCACCCCCCAGGGCCTTCGCCTCCAGCCTCAGCCGAGCGCTGAGCTCCGATTTGGAAACAAACGCCCTAGCTCTCCCGGCTTCCCACAACTCTTATCTTGCGAAAGTTGGTGTGTTCCTTGTCCTGTGGACTCCCACCTCCAGCTCTTG
Seq C2 exon
GCAGAAGACTTTAACTAGGGGCGGGCGAGCAGATGTGTGAGATCTTCTATTCAAAGAGTGGACATATAGCCCAGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004410-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]