HsaEX0049414 @ hg19
Exon Skipping
Gene
ENSG00000138398 | PPIG
Description
peptidylprolyl isomerase G (cyclophilin G) [Source:HGNC Symbol;Acc:14650]
Coordinates
chr2:170440850-170460612:+
Coord C1 exon
chr2:170440850-170441000
Coord A exon
chr2:170460152-170460204
Coord C2 exon
chr2:170460536-170460612
Length
53 bp
Sequences
Splice sites
3' ss Seq
CTCTCATTTTTGTTTTCTAGGAG
3' ss Score
11.64
5' ss Seq
AAGGTAATC
5' ss Score
7.46
Exon sequences
Seq C1 exon
GCGCTTCCGGTGCGACGCTGTCTCTCCATGCCAGGACTGAGTTGTGGGGGAGGGAGGCGGTTAGCGGGCTTTAGCGCCTTTTCTGGCGGCGGTAGATTTGAAGCGCTTCAAAGGACCGGACCCAGAGAAGAGGAAAACTCTACCGGTGCAG
Seq A exon
GAGCACAGGGATCAGTTGTCCTTGTTTTTTTTTGGTCTTTTCTTCATTTGAAG
Seq C2 exon
ATTAAGTATTGGAGCCATGGGAATAAAGGTTCAACGTCCTCGATGTTTTTTTGACATTGCCATTAACAATCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138398-'0-5,'0-3,5-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.381 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016016=Pro_isomerase=PU(12.7=45.2)
A:
NA
C2:
PF0016016=Pro_isomerase=PU(20.8=47.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTTAGCGCCTTTTCTGGC
R:
AACATCGAGGACGTTGAACCT
Band lengths:
132-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)