MmuEX0036569 @ mm10
Exon Skipping
Gene
ENSMUSG00000042133 | Ppig
Description
peptidyl-prolyl isomerase G (cyclophilin G) [Source:MGI Symbol;Acc:MGI:2445173]
Coordinates
chr2:69722545-69732274:+
Coord C1 exon
chr2:69722545-69722957
Coord A exon
chr2:69731746-69731813
Coord C2 exon
chr2:69732197-69732274
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTCTCATTTTTCTTTCCTAGGAG
3' ss Score
11.35
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GAGCGTTTGCTGAAGGTTCCTTGGAGGCAGAACGTCTCTCTAAATACCTCGACAGAGGATGTCACTGTTTATAAAGTGATGCGCATCATTTCGGGAGCGCTGTGACATTCTGACGGATCCACACCGATCCAATCAACTCTCAGAAACCATCAAGCGACCCGTCGGGAACGTATTTTAAAAGGCAGAAGAGACCCTACAAGCTCAAGGAGAAGATGCTGACGTCAGCCCGGGAACGCCGGGAGTCGCCGGCACCCATCCCTGACGTACTTCCGGCGCGACACCTTCCCTCCACGCCTGGCCTGGGCTGTGGGGGAGGGAGGCGGTTAGTGGGCTTTAGCGCCTTTCCTGACGGCGGTAGATTTGAAGCGCTTTCCAGGACCGGGCCGGGAGACGAGAAGCCCGCGGCGGGGCAG
Seq A exon
GAGCAAAACAATTGGCTCAGTCATTCTTGGTGGATTTTTGTTTTTTTATTGTTTCCCCCAACTTAAAG
Seq C2 exon
ACTGAAGTGTTGGAACCATGGGGATAAAGGTCCAGCGTCCTCGGTGTTTTTTTGACATTGCCATTAATAATCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042133_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016016=Pro_isomerase=PU(6.0=47.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCTGACGTACTTCCGGC
R:
CCCCATGGTTCCAACACTTCA
Band lengths:
182-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types