RnoEX0068617 @ rn6
Exon Skipping
Gene
ENSRNOG00000007673 | Ppig
Description
peptidylprolyl isomerase G [Source:RGD Symbol;Acc:620315]
Coordinates
chr3:55961075-55969207:+
Coord C1 exon
chr3:55961075-55961178
Coord A exon
chr3:55968676-55968743
Coord C2 exon
chr3:55969130-55969207
Length
68 bp
Sequences
Splice sites
3' ss Seq
CTTTCATTTTTCTTTCCTAGGAA
3' ss Score
12.25
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GAGTACATTCCTTGGGCCATGAGACGCTCTCTTTTTTGTTTGTTTTTGATCACCAGTACATCTAAGAAGTAATAGAGTGTGGAGCTAAATCCAGAAAGAATAAG
Seq A exon
GAACAAAACGATTGACTCAGTTATCCTTGGTGGGTTTTCGTTTTTTATTGTTTCCCCTAAACTGAAAG
Seq C2 exon
ACTGAAGTGTCGGAACCATGGGAATAAAGGTTCAGCGTCCTCGATGTTTTTTTGACATTGCCATTAATAATCAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007673-'3-8,'3-6,6-8
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0016016=Pro_isomerase=PU(6.0=47.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCATGAGACGCTCTCTTTT
R:
CAGGTTGATTATTAATGGCAATGTCA
Band lengths:
168-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]