HsaEX0050463 @ hg38
Exon Skipping
Gene
ENSG00000204314 | PRRT1
Description
proline rich transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:13943]
Coordinates
chr6:32151809-32153083:-
Coord C1 exon
chr6:32152972-32153083
Coord A exon
chr6:32152095-32152175
Coord C2 exon
chr6:32151809-32151899
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCTTCCTTTCCTTAGTCC
3' ss Score
9.45
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
ATCTGACTCTGTGGAGCCTGGGACTGGTTTCAGCGAGAGCCTCTGTACTGCTCTGTAGTCTCTGCTAGGACATGGACGAAAAGGGACGCAGCCGGGAGAGCGACTGCCCCAG
Seq A exon
TCCCACCCGCCTCGCCTGGTCTAGCCTCCGTGTTTCCATGACAACTCCAAAGGAACCCAAACTGGGGGCTTGAATGCCGGG
Seq C2 exon
CACCCAGACTCCAGCACCGGCCGAGGACCCCCACTCCGGCTGCAGGGACCCTGTCCCAGCGAGACCGCAGGCATGTCATCCGAAAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204314-'10-12,'10-8,13-12
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGAGCCTCTGTACTGCTCT
R:
TGACTTTTCGGATGACATGCCT
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development