HsaINT1028178 @ hg38
Intron Retention
Gene
ENSG00000204314 | PRRT1
Description
proline rich transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:13943]
Coordinates
chr6:32152095-32153083:-
Coord C1 exon
chr6:32152972-32153083
Coord A exon
chr6:32152176-32152971
Coord C2 exon
chr6:32152095-32152175
Length
796 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TCCTTCCTTCCTTTCCTTAGTCC
3' ss Score
9.45
Exon sequences
Seq C1 exon
ATCTGACTCTGTGGAGCCTGGGACTGGTTTCAGCGAGAGCCTCTGTACTGCTCTGTAGTCTCTGCTAGGACATGGACGAAAAGGGACGCAGCCGGGAGAGCGACTGCCCCAG
Seq A exon
GTGGGGGCTGGGGGGACGTAAGGGAAGAATAATAATTATCTGGCTGTGTTTTTGTTTAAAAAAAAAAAAAAACTGGTGTAAATCTCCATAGACTTCCTATCCTCGCTCCCTTCACCCACCCACGCGCTCCCAAGATGCAATAAGCAAATAAAAAGACTAATAACGCTGTACTGCAGGTCGACTCAGGAGCTGGAGATGCGTCTTGGTGGGAGGTGGTGGGTGGGAGTAGGGGGGTTTAGGGAATGGATCTGAACATTGACCAGCCCAGAGACTCTAAGCAGCCTCAAAAGCAAAGGGAAAGTGGGGGAACAAGCACACATTACCAACAGAGCTGCCAGAAATGAGCAGTTAAGTCATACCCCCTACCCCCTCCAAAAGAGCTTCAGCTCCTTAGTCCTGGACGAAGAAGGTATGTATGCACACCGCCCAAACTCTCTCTCCCTTTTCCCTCCAAGGCCCAGCTCCCCCTGATTTACAGACCTGGGCCTCCCTCTTTACTGCTAGGTTGGTAGGTTCACCAAACCCTGGGAACTTTTCAGACCATCGCAGTTCTGAACTCTGCACAATTCTCTCTCACACACAAGTATTTATCTCTTCTAAAGAGGAGGAAACTGGGGCCAAGGATTTGGGAGAAGACCCTGGCACCTTGCAGGGAGCTAAGAGGGGGAGACGACCTGCCTCTGGAGGCACCTGGGTTATTAACTCCACTGAGAACCTGTTCACTTCCTCCCACAATACAATCACTGAGTCTTGGTGGGGGAGACTCCAGAGAGTTCTCCTTCCTTCCTTTCCTTAG
Seq C2 exon
TCCCACCCGCCTCGCCTGGTCTAGCCTCCGTGTTTCCATGACAACTCCAAAGGAACCCAAACTGGGGGCTTGAATGCCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204314:ENST00000375150:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGACTCTGTGGAGCCTGG
R:
GCATTCAAGCCCCCAGTTTGG
Band lengths:
189-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains