HsaEX0050670 @ hg19
Exon Skipping
Gene
ENSG00000121390 | PSPC1
Description
paraspeckle component 1 [Source:HGNC Symbol;Acc:20320]
Coordinates
chr13:20248322-20252078:-
Coord C1 exon
chr13:20251864-20252078
Coord A exon
chr13:20249056-20249124
Coord C2 exon
chr13:20248322-20248394
Length
69 bp
Sequences
Splice sites
3' ss Seq
AACCTTCATTGTCTTCACAGTCT
3' ss Score
7.66
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
Exon sequences
Seq C1 exon
TATCGAAACCTCAATTACTGTTATGAATTTACTAAATGAGTTAACTCTGATTTTTCTCATTGTTTATTGAAATCAGTTCTTAAAAAGGCTGAATCTGATTTCATTGTATTTCTAGGGTGATAAAAGAAAATGTGGCTGAAGTTACCCGAAGTTCAGCTTGCAGTGTAATTCAGAAGAGTTAAGACCAGAAGTACTGGAATCATACTTCCTTTCAG
Seq A exon
TCTTGCCACTTGCCTAGTGAGGCTTTTCCGAACCTGGAAGGAGACGTCTAGAAATCCCAACTTTGCTGT
Seq C2 exon
AACAGACAAAAGGACGTGGAATGTACTTTCTGCTACAGCCATTACAGTCAACTAGATTTGAGTGCTGCCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121390_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGATAAAAGAAAATGTGGCTGA
R:
GCGGCAGCACTCAAATCTAGT
Band lengths:
172-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)