HsaEX0050670 @ hg38
Exon Skipping
Gene
ENSG00000121390 | PSPC1
Description
paraspeckle component 1 [Source:HGNC Symbol;Acc:HGNC:20320]
Coordinates
chr13:19669798-19677823:-
Coord C1 exon
chr13:19677720-19677823
Coord A exon
chr13:19674916-19674984
Coord C2 exon
chr13:19669798-19674254
Length
69 bp
Sequences
Splice sites
3' ss Seq
AACCTTCATTGTCTTCACAGTCT
3' ss Score
7.66
5' ss Seq
TGTGTAAGG
5' ss Score
4.52
Exon sequences
Seq C1 exon
GGTGATAAAAGAAAATGTGGCTGAAGTTACCCGAAGTTCAGCTTGCAGTGTAATTCAGAAGAGTTAAGACCAGAAGTACTGGAATCATACTTCCTTTCAGGTCA
Seq A exon
TCTTGCCACTTGCCTAGTGAGGCTTTTCCGAACCTGGAAGGAGACGTCTAGAAATCCCAACTTTGCTGT
Seq C2 exon
AACAGACAAAAGGACGTGGAATGTACTTTCTGCTACAGCCATTACAGTCAACTAGATTTGAGTGCTGCCGCTGGTAAGTTAATTGAATAGCCAAGTTATGTTGTCCTTACCCAAGTAGACAGTGGAAAGGAATAATGGCAGAGGCCATGATGCGAGTCTGGCCACAGCCATGCATCCCATCTGTGGTGATCTTAGTCCTGAGATCACCTATGTCCTAGGCCACGAACTGAATCATGTACTAGTACCATATCATCTGACTTCGTAGCTTTCCAGGGGAAAAGACTAGGAGATCCGGACATGACTAGGTCTGTGTCCTCAGTCACATAAGCTGTGCTGCGTACACTTGAACTGCACTACACAACATTGCCCTGGGCCTTGACCTGTACTTCTAAATGTTATAATAAACCTTTTGGTAAGGTGCTGCCTGAGAACTGCTTTGTTTTCCAGAGGGATCATTGCTCAGGCTTTTTCCCCCGGATAATTTGAACTATTTGACGATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000121390_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTGAAGTTACCCGAAGT
R:
CAATTAACTTACCAGCGGCAGC
Band lengths:
173-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development