HsaEX0054665 @ hg19
Exon Skipping
Gene
ENSG00000245958 | RP11-33B1.1
Description
NA
Coordinates
chr4:120415581-120433619:+
Coord C1 exon
chr4:120415581-120415678
Coord A exon
chr4:120418966-120419058
Coord C2 exon
chr4:120433506-120433619
Length
93 bp
Sequences
Splice sites
3' ss Seq
ACATTTTTCTTCACTGATAGACA
3' ss Score
6.85
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TACAAAGCATGGCAAAATGAGGAAACCACTGACAGGTGAAGAATTTGCACAATGGAAAACCACCTTGACCATCTCATGACTTTATACAGGAATCGGAG
Seq A exon
ACATCCAAGGCCATTCCATTTCTAAATCACACTTATCCCTCAATCAAGTCAGTGACTGGATCATCTCCTAAGGTTTCACCTGCTTTGCATCAG
Seq C2 exon
TGAGTTGGACTATGGATCAGGTACTGTGCTCAGCATCAGAAAATGGGATGACAATGAACAGAGTAACAGGACTATATTTCTGAAAAAGGATGAACTTACTGGAAACAGGATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245958_MULTIEX1-6/7=5-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACAATGGAAAACCACCTTG
R:
GCAATCCTGTTTCCAGTAAGTTCA
Band lengths:
167-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)