HsaEX0054666 @ hg19
Exon Skipping
Gene
ENSG00000245958 | RP11-33B1.1
Description
NA
Coordinates
chr4:120418966-120433619:+
Coord C1 exon
chr4:120418966-120419058
Coord A exon
chr4:120420716-120421026
Coord C2 exon
chr4:120433506-120433619
Length
311 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTTCTTTTTTTTAGGGC
3' ss Score
12.39
5' ss Seq
ATAGTGAGA
5' ss Score
1.69
Exon sequences
Seq C1 exon
ACATCCAAGGCCATTCCATTTCTAAATCACACTTATCCCTCAATCAAGTCAGTGACTGGATCATCTCCTAAGGTTTCACCTGCTTTGCATCAG
Seq A exon
GGCAGGGTTCCACTCCCATTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCCCCTCCTCCCCTATTCAAGCAATTCTTCTGCCTCAGTCTTCTAAGTGGCTGGGACTACAAGCGCGTGCCACCACACCCGCGCTTATAATAGAAAATAATTTTTCTGTTTTTTTGTAGGGATGGGGTTTCACCATGTTGGCCAGGCTGGCCTCGAACTCCTGAGCTCAAGTGATCAACCTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGTGTAAGCCACCATGCCCGGCCTCTGATTTTTCTATA
Seq C2 exon
TGAGTTGGACTATGGATCAGGTACTGTGCTCAGCATCAGAAAATGGGATGACAATGAACAGAGTAACAGGACTATATTTCTGAAAAAGGATGAACTTACTGGAAACAGGATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245958_MULTIEX1-7/7=6-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATCCAAGGCCATTCCATTTCT
R:
GCAATCCTGTTTCCAGTAAGTTCA
Band lengths:
207-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)