HsaEX0054666 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr4:119497662-119512464:+
Coord C1 exon
chr4:119497662-119497903
Coord A exon
chr4:119499561-119499871
Coord C2 exon
chr4:119512351-119512464
Length
311 bp
Sequences
Splice sites
3' ss Seq
CTTTTTCTTCTTTTTTTTAGGGC
3' ss Score
12.39
5' ss Seq
ATAGTGAGA
5' ss Score
1.69
Exon sequences
Seq C1 exon
GAAAAAGAGTCATTTTGTACTCTCTTATCTATAACCATGTCTCACTTCAAGTCAATGCTACAATTGTCACTTTTATTTTGAAAAGGAAGCTCAGAAGGAAAAAAACTCTTAGAGAGATCTTCTAACAGAACATTTTTCTTCACTGATAGACATCCAAGGCCATTCCATTTCTAAATCACACTTATCCCTCAATCAAGTCAGTGACTGGATCATCTCCTAAGGTTTCACCTGCTTTGCATCAG
Seq A exon
GGCAGGGTTCCACTCCCATTGCCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAACCCCCTCCTCCCCTATTCAAGCAATTCTTCTGCCTCAGTCTTCTAAGTGGCTGGGACTACAAGCGCGTGCCACCACACCCGCGCTTATAATAGAAAATAATTTTTCTGTTTTTTTGTAGGGATGGGGTTTCACCATGTTGGCCAGGCTGGCCTCGAACTCCTGAGCTCAAGTGATCAACCTGCCTCTGCCTCCCAAAGTGCTGGGATTACAGGTGTAAGCCACCATGCCCGGCCTCTGATTTTTCTATA
Seq C2 exon
TGAGTTGGACTATGGATCAGGTACTGTGCTCAGCATCAGAAAATGGGATGACAATGAACAGAGTAACAGGACTATATTTCTGAAAAAGGATGAACTTACTGGAAACAGGATTGC
VastDB Features
Vast-tools module Information
Secondary ID
Hs.677546_MULTIEX2-9/16=8-11
Average complexity
C1
Mappability confidence:
89%=100=89%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACCATGTCTCACTTCAAGTCA
R:
GCAATCCTGTTTCCAGTAAGTTCA
Band lengths:
326-637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development