HsaEX1000870 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr4:119493333-119512920:+
Coord C1 exon
chr4:119493333-119493437
Coord A exon
chr4:119494433-119494523
Coord C2 exon
chr4:119512813-119512920
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTATTTTTACAAAGCAT
3' ss Score
4.99
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
GAAGGGTAGATGTCTACCCAAATGGAATATTGAGTATCAGAGACTTCAAATGATAACTTTTGTTTGTTTGGAGAAAATCTTGAGGACGTGATCACTGTACAAAAG
Seq A exon
CATGGCAAAATGAGGAAACCACTGACAGGTGAAGAATTTGCACAATGGAAAACCACCTTGACCATCTCATGACTTTATACAGGAATCGGAG
Seq C2 exon
GTGCCTGAAATATATCCAAATGGATATAAATGTCAACTCAGTTCTGGGCTGGAGATATAGATTTGGAATGCACCAACAATGCAGATGGTAATCCTGGCATGCGAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
Hs.677546_MULTIEX2-7/16=6-12
Average complexity
C2
Mappability confidence:
92%=100=92%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTACCCAAATGGAATATTGAGT
R:
TGCATTGTTGGTGCATTCCAA
Band lengths:
178-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains