HsaEX1000866 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr4:119512351-119528789:+
Coord C1 exon
chr4:119512351-119512464
Coord A exon
chr4:119512813-119512970
Coord C2 exon
chr4:119528740-119528789
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTGGATCTGTTCATTTTAAGGTG
3' ss Score
8.8
5' ss Seq
CAGGTAGTT
5' ss Score
6.3
Exon sequences
Seq C1 exon
TGAGTTGGACTATGGATCAGGTACTGTGCTCAGCATCAGAAAATGGGATGACAATGAACAGAGTAACAGGACTATATTTCTGAAAAAGGATGAACTTACTGGAAACAGGATTGC
Seq A exon
GTGCCTGAAATATATCCAAATGGATATAAATGTCAACTCAGTTCTGGGCTGGAGATATAGATTTGGAATGCACCAACAATGCAGATGGTAATCCTGGCATGCGAGTAGGTGAGATCATCCAGGGAGATGGCCTATAATGAGAGCCTACAACATGTCAG
Seq C2 exon
GGCTCAAGCACCTCTTACTGCCTCCTCACTCTGGAACCAAATGCCTTACT
VastDB Features
Vast-tools module Information
Secondary ID
Hs.677546_MULTIEX2-12/16=11-13
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTTGGACTATGGATCAGGT
R:
GTAAGGCATTTGGTTCCAGAGTGA
Band lengths:
163-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains