HsaEX0054667 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr4:119512813-119550443:+
Coord C1 exon
chr4:119512813-119512970
Coord A exon
chr4:119528740-119528789
Coord C2 exon
chr4:119550379-119550443
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATTTATCTCTGTATCCACAGGGC
3' ss Score
9.89
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGCCTGAAATATATCCAAATGGATATAAATGTCAACTCAGTTCTGGGCTGGAGATATAGATTTGGAATGCACCAACAATGCAGATGGTAATCCTGGCATGCGAGTAGGTGAGATCATCCAGGGAGATGGCCTATAATGAGAGCCTACAACATGTCAG
Seq A exon
GGCTCAAGCACCTCTTACTGCCTCCTCACTCTGGAACCAAATGCCTTACT
Seq C2 exon
TGACAGGATCACAGAATGTGAATTTTGAACAGATCTGAAAAGTTATTAAGTTCAACTCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
Hs.677546_MULTIEX2-13/16=12-16
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTAATCCTGGCATGCGAG
R:
CTCTGTGGAGTTGAACTTAATAACTT
Band lengths:
139-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development