HsaEX0054667 @ hg19
Exon Skipping
Gene
ENSG00000245958 | RP11-33B1.1
Description
NA
Coordinates
chr4:120433968-120465000:+
Coord C1 exon
chr4:120433968-120434125
Coord A exon
chr4:120449895-120449944
Coord C2 exon
chr4:120464908-120465000
Length
50 bp
Sequences
Splice sites
3' ss Seq
ATTTATCTCTGTATCCACAGGGC
3' ss Score
9.89
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGCCTGAAATATATCCAAATGGATATAAATGTCAACTCAGTTCTGGGCTGGAGATATAGATTTGGAATGCACCAACAATGCAGATGGTAATCCTGGCATGCGAGTAGGTGAGATCATCCAGGGAGATGGCCTATAATGAGAGCCTACAACATGTCAG
Seq A exon
GGCTCAAGCACCTCTTACTGCCTCCTCACTCTGGAACCAAATGCCTTACT
Seq C2 exon
GTCTGCACTGCTCCCCATTGCCTTCCCTCCCGCCTCACCAGTTGATCCCTATACCTCCTTCCCAATGACCTCCAGGAGGCCTCTAACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000245958_MULTIEX2-1/3=C1-2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCATGCGAGTAGGTGAGAT
R:
TGGAGGTCATTGGGAAGGAGG
Band lengths:
138-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)