HsaEX0056546 @ hg38
Exon Skipping
Gene
ENSG00000153253 | SCN3A
Description
sodium voltage-gated channel alpha subunit 3 [Source:HGNC Symbol;Acc:HGNC:10590]
Coordinates
chr2:165176131-165186747:-
Coord C1 exon
chr2:165186551-165186747
Coord A exon
chr2:165179552-165179691
Coord C2 exon
chr2:165176131-165176444
Length
140 bp
Sequences
Splice sites
3' ss Seq
AAACCCTAATTCTCTTGCAGGGG
3' ss Score
7.98
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
AGATTATGGAGCAAGAAAACTGAAGCCAAGCCACATCAAGGTTTGACAGGGATGAGATACCTGTCAAGGATTCATAGTAGAGTGGCTTACTGGGAAAGGAGCAAAGAATCTCTTCTAGGGATATTGTAAGAATAAATGAGATAATTCACAGAAGGGACCTGGAGCTTTTCCGGAAAAAGGTGCTGTGACTATCTAAG
Seq A exon
GGGAAAAGCTGAGAGTCTGGAACTAGCCTATCTTCCGAGGACTTAGAGACAACAGTATGGGAATTTCAACGAGACGTTTTTACTTTCTTTTGACCAAGATTCAAATTCTTTATTCCAGCCCTTGATAAGTAAATAAGAAG
Seq C2 exon
GTAATTCGTATGCAAGAAGCTACACGTAATTAAATGTGCAGGATGAAAAGATGGCACAGGCACTGTTGGTACCCCCAGGACCTGAAAGCTTCCGCCTTTTTACTAGAGAATCTCTTGCTGCTATCGAAAAACGTGCTGCAGAAGAGAAAGCCAAGAAGCCCAAAAAGGAACAAGATAATGATGATGAGAACAAACCAAAGCCAAATAGTGACTTGGAAGCTGGAAAGAACCTTCCATTTATTTATGGAGACATTCCTCCAGAGATGGTGTCAGAGCCCCTGGAGGACCTGGATCCCTACTATATCAATAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153253_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.330
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGCCAAGCCACATCAAGG
R:
ACAGTGCCTGTGCCATCTTTT
Band lengths:
243-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development