HsaEX1001945 @ hg38
Exon Skipping
Gene
ENSG00000236283 | AC013463.2
Description
NA
Coordinates
chr2:165091120-165195083:+
Coord C1 exon
chr2:165091120-165091299
Coord A exon
chr2:165130045-165130204
Coord C2 exon
chr2:165194896-165195083
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCTATCCACTCTCCACACAGCAC
3' ss Score
8.07
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCAAAGTTGGACATCCCAAAGATGGCATAGATAAACATGACCAGGAAGAGCAGGAGGCCGATGTTAAACAACGCAGGAAGGGACATCATCAAAGCAAAGAGCAGCGTGCGGATCCCCTTTGCTCCTTTGATCAGACGTAGGATTCGGCCAATCCTGGCAAGACGGATCACTCGGAACAAG
Seq A exon
CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG
Seq C2 exon
GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236283_MULTIEX3-3/5=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- HsaALTD0005697-1/6
- HsaALTD0005697-2/6
- HsaALTD0005697-4/6
- HsaALTD0005697-5/6
- HsaEX0056546
- HsaEX0056547
- HsaEX0056548
- HsaEX1001943
- HsaEX1001944
- HsaEX1001946
- HsaEX1001947
- HsaEX6016334
- HsaEX6016335
- HsaEX6016337
- HsaEX6016338
- HsaEX6016339
- HsaEX6016340
- HsaEX6016344
- HsaEX6016348
- HsaEX7001515
- HsaINT0145836
- HsaINT0145844
- HsaINT0145853
- HsaINT1041026
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACGCAGGAAGGGACATC
R:
GAACAGCATCCCCTTCCTGTC
Band lengths:
257-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains