HsaEX7001515 @ hg38
Exon Skipping
Gene
ENSG00000236283 | AC013463.2
Description
NA
Coordinates
chr2:165130045-165195083:+
Coord C1 exon
chr2:165130045-165130204
Coord A exon
chr2:165139599-165139709
Coord C2 exon
chr2:165194896-165195083
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTTCTGACTTCCGTTTCTGTGG
3' ss Score
1.37
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACCAAG
Seq A exon
TGGTGGTGCCCTGCAAACCAAATACTGATGGCTCAAACCACTCTTCCCAATAAGTAATACAACACCACATAGCATTTCTTTGGCAAATCATGCTACATGCAATTTTTCCAG
Seq C2 exon
GCTCCGAGCACATCATTGGCACCAAAATAGAGCAAAGGACTGTGTGCACTGCCCTGATTTAGGTGTGGATGATGCCACTTACTGCAGCGGGGAATGCAGAGTAAAAGGTCTCTGCACATAAGGACAGGAAGGGGATGCTGTTCAGTGCTCAATTCTTTTGAGGCTAAAGGAGATCCAGAATTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236283-'38-41,'38-35,40-41=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCGGAACACAATCAGGAAG
R:
CGCTGCAGTAAGTGGCATCAT
Band lengths:
248-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains