HsaEX0056838 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr1:177967683-177973309:-
Coord C1 exon
chr1:177973193-177973309
Coord A exon
chr1:177971396-177971467
Coord C2 exon
chr1:177967683-177968039
Length
72 bp
Sequences
Splice sites
3' ss Seq
ATGTGCATGTTCTTCTCTAGTTC
3' ss Score
8.27
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TAAAGGATTAGGATGAAGCCTGAGGGATGTCTTAAATGCTGAGCTGCCCTTTGCAAGAGTAACCAGTCATTAAATCACAGTGCTCAAGGATTCCTGGCAAACCTGACCTAGATCTAG
Seq A exon
TTCCTCTTCCCAGAAGGATTAAAAACAACAGTGCAGCCATTAGAGAGCCAAACTTCACAGCCCAAGAGTGAG
Seq C2 exon
GAAGATAAAATAACTGCACAACTTACTCAAAACCCAGGACAAATTCAGAGAGTCAAGGATGGAACTTTGGGCTCCCCAGAGGCTGCCCCAGACACGAGGGAAGGCCACAGCACCCTCAAAGGATCCAGACCGAGGGTTTCGGAGAGATGGACATCATCGGCCTGTCCCTCACTCTTGGCACAATGGAGAGAGGTTTCACCAATGGCAAGACAACCGTGGGAGCCCCCAGCCACAGCAGGAGCCCAGGGCAGACCATCAGCAGCAGCCCCATTATGCATCCAGGCCAGGGGACTGGCATCAGCCTGTGTCTGGAGTTGACTATTACGAAGGTGGTTATCGCAATCAGTTGTATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000254154-'20-26,'20-25,21-26
Average complexity
C3
Mappability confidence:
0%=0=0%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCAAGGATTCCTGGCAA
R:
TCTGGATCCTTTGAGGGTGCT
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development