MmuEX6028547 @ mm10
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157507386-157529504:+
Coord C1 exon
chr1:157507386-157507553
Coord A exon
chr1:157524785-157524853
Coord C2 exon
chr1:157529164-157529504
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATGTCTGTGTCCTCCTCCAGGGC
3' ss Score
11.57
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CTATACAGATGACTAGGGGCCTGGTGCCTGCCAACTGTGACAAATGAGGACTTGGCACAGAGTGGTGAGCAAGCGGTGGCTGTGTGGCTTCTGTTCCCAAGGTTTATATCCTGAAGTTGGGTCCAGAGTTCCTGCTATTTGCCGAGTTCATAAACCATGTGTTTACAG
Seq A exon
GGCCTCTTCCCAGGGAGATCAAAAGCATCATCGAAGCCACTGGTGAGCCAGTCCTCACGGCCTAGCGTG
Seq C2 exon
GAAATTAAAGTAACTACATAACAGCCTCAAGACCCAACGGGGAAAATCAAAGGGCCAGAGATGGAACCTTGGGTTCCCCAGACACAAGGAAGGACCACGGGACCATCAAGGGATACAAATAGAGGACTTCAGAGTGGACATTATAGACCCCGTCTGCATTCTCAGTACAGTGGAGATAAGTACCACCAATGGCAAGATGCCCACAAGAACTCAAAGTCACAGCAGGACCTCAGGGATGACCACCAACAGTCTCACTCTGTATCCAGGAGTGGGGAGTGGTCCCAGCCTGTGTCTGGTGCTGACTACTTGAAAGGATCTTATCCCAGTCACCTGTACTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'1-10,'1-3,5-10=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.926
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTCTGTTCCCAAGGTT
R:
TCCTTCCTTGTGTCTGGGGAA
Band lengths:
179-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types