HsaEX0057127 @ hg38
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100969518-100973036:+
Coord C1 exon
chr10:100969518-100969591
Coord A exon
chr10:100969692-100969924
Coord C2 exon
chr10:100972529-100973036
Length
233 bp
Sequences
Splice sites
3' ss Seq
CGTCCATTCTACCCTCCAAGCTG
3' ss Score
4.88
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
CCTCTCGCAGCTGGTGCTGTGGGGCCGCGGAGCCGCGCGTCGCTGTCTCTATGGCCCCGGATCCGAGCGCAAAG
Seq A exon
CTGGGCCAGGCCTTTCTCACCACCAAGTCCCCCGGTCCTGCATGACGGCTCTAGAGGGGCGCGGGCCAGGCCTCGGGCTGCGCGGGGTGCAAACCGGCCACCACGGAGTCGGGGACCAGCGCGGGGAGGGGGCCGCGTGGCGAACAGTGTTCCCCAGGATCTGGGTCACGTCTCCCGGCGTCCGGCGGGATCGAAGGAGAGCTTGTCCTCGAGCTGCAGCAGTAGAGACTGAG
Seq C2 exon
AAAACGGACCTCAGAAAACCAGGACTAGCTCTACTGTCGGGGGCAGGGTGACCCCATCAGTAACCTACAACCCCTCTAGAACTTCACAACTCCCTCTCACCATGGAGTTTGCATTTGATGCAGAAAGGCATGTGATCCCTCCCTCCTTCTGACCTCTTAGCTGGGGATTCCATGGCCACACAACCCTGTGACTCCATGTCCCCCCGATTCCAGGACCCCCCATGGCCCCATGATTCCTTGACTCCTATGACCTTATGACCCCTGACCTTCCAAGTGACTTCCTTGGACTTTGACCCCTGTGACTGTGCTTCCCATTCCCCGCCCCCACAACCTGTGACTCTGGCTCCCTTTGGGGGTCTTGTTAGTCTGGGCCTCCCCAGGAAGATGTGGGGGAGGCTCTGGCCCCTCCTCCTCAGCATCCTCACAGCAACTGCAGTCCCAGGACCCTCACTGCGGAGACCGTCTAGAGAACTAGATGCCACCCCTCGGATGACCATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539_MULTIEX1-1/5=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.357
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTCTATGGCCCCGGATC
R:
ACTTGGAAGGTCAGGGGTCAT
Band lengths:
307-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development