HsaEX0057128 @ hg38
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100969518-100973036:+
Coord C1 exon
chr10:100969518-100969591
Coord A exon
chr10:100972529-100972655
Coord C2 exon
chr10:100972894-100973036
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCGTTTTTTCTTCAGAAA
3' ss Score
11.74
5' ss Seq
AAGGCATGT
5' ss Score
2.03
Exon sequences
Seq C1 exon
CCTCTCGCAGCTGGTGCTGTGGGGCCGCGGAGCCGCGCGTCGCTGTCTCTATGGCCCCGGATCCGAGCGCAAAG
Seq A exon
AAAACGGACCTCAGAAAACCAGGACTAGCTCTACTGTCGGGGGCAGGGTGACCCCATCAGTAACCTACAACCCCTCTAGAACTTCACAACTCCCTCTCACCATGGAGTTTGCATTTGATGCAGAAAG
Seq C2 exon
TCTGGGCCTCCCCAGGAAGATGTGGGGGAGGCTCTGGCCCCTCCTCCTCAGCATCCTCACAGCAACTGCAGTCCCAGGACCCTCACTGCGGAGACCGTCTAGAGAACTAGATGCCACCCCTCGGATGACCATACCCTATGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539_MULTIEX1-2/5=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.357 C2=0.357
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGTCGCTGTCTCTATGG
R:
ATAGGGTATGGTCATCCGAGGG
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development