BtaEX6100312 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018604 | SEMA4G
Description
Bos taurus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G (SEMA4G), mRNA. [Source:RefSeq mRNA;Acc:NM_001101117]
Coordinates
chr26:21677156-21680877:+
Coord C1 exon
chr26:21677156-21677211
Coord A exon
chr26:21680163-21680629
Coord C2 exon
chr26:21680729-21680877
Length
467 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTCTTTTCTTCAGAAA
3' ss Score
10.93
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GTGGGGCCGCGGAGCCGCGCATCGCCGTCTGCATGGCCGGGGATCTGCGAGCAAAG
Seq A exon
AAAACAGACCTCAGTGAACCAGAACTAGCCCTGCTTTTGGGGCAGGGTGACCCCACCAGTGATCTACAACCCCTGTGTGACCCCACCATGGAATTTGTAACTGATGCCGAGAGGCAGTCTGGAATCCACCCCTCTTCTTGACCTCTTACCTGGGATTCCATGGCTGCACAATCATGTGATTCCATGTCTTCCCGATTCCAGGACCCTCCCTGGCCCCATGACCTCTGACCTTCTAAGCAACCTCCCTGGACCTTAATACCCTGTGACTATTCTTCCCATCATCCCCCAACCTCTGGCCCTGGCTCCCTTTGGGAGTCTTGTTGGTCTGGGCCTCCCCAGGAAGATGTGGGGGAGGCTCTGGCCCTTCCTCCTGAGCTTCCTCACAGCAACTGCAGTCCCTGGACCCTCACTGCGGAGACCATCCAGAGAACTAGATGCCACCCCACGGATGACCATCCCCTACGAAG
Seq C2 exon
AGCTCTCTGGGACCCGGCACTTCAAGGGCCAAGCCCAGAACTACTCAACACTGCTGCTGGAGGAGGCCTCTGCAAGGCTGCTGGTGGGAGCCCGAGGTGCCCTGTTCTCTCTCAATGCGCAAGACATAGGAGATGGGACTCACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018604-'2-3,'2-1,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.357 C2=0.040
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(8.1=70.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGCCGTCTGCATGG
R:
CTCTTTGTGAGTCCCATCTCCT
Band lengths:
187-654
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]