HsaEX0057128 @ hg19
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:10735]
Coordinates
chr10:102729275-102733366:+
Coord C1 exon
chr10:102729275-102729348
Coord A exon
chr10:102732286-102732793
Coord C2 exon
chr10:102733304-102733366
Length
508 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCGTTTTTTCTTCAGAAA
3' ss Score
11.74
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
CCTCTCGCAGCTGGTGCTGTGGGGCCGCGGAGCCGCGCGTCGCTGTCTCTATGGCCCCGGATCCGAGCGCAAAG
Seq A exon
AAAACGGACCTCAGAAAACCAGGACTAGCTCTACTGTCGGGGGCAGGGTGACCCCATCAGTAACCTACAACCCCTCTAGAACTTCACAACTCCCTCTCACCATGGAGTTTGCATTTGATGCAGAAAGGCATGTGATCCCTCCCTCCTTCTGACCTCTTAGCTGGGGATTCCATGGCCACACAACCCTGTGACTCCATGTCCCCCCGATTCCAGGACCCCCCATGGCCCCATGATTCCTTGACTCCTATGACCTTATGACCCCTGACCTTCCAAGTGACTTCCTTGGACTTTGACCCCTGTGACTGTGCTTCCCATTCCCCGCCCCCACAACCTGTGACTCTGGCTCCCTTTGGGGGTCTTGTTAGTCTGGGCCTCCCCAGGAAGATGTGGGGGAGGCTCTGGCCCCTCCTCCTCAGCATCCTCACAGCAACTGCAGTCCCAGGACCCTCACTGCGGAGACCGTCTAGAGAACTAGATGCCACCCCTCGGATGACCATACCCTATGAAG
Seq C2 exon
ATCCACTGGGAAGCCTCCCCAGAGATGCAAAGCAAATGTCATCAAAAAGGGAAAAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539_MULTIEX1-2/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.357 C2=0.639
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)