MmuEX6033166 @ mm10
Exon Skipping
Gene
ENSMUSG00000025207 | Sema4g
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:MGI Symbol;Acc:MGI:1347047]
Coordinates
chr19:44991258-44992882:+
Coord C1 exon
chr19:44991258-44991358
Coord A exon
chr19:44992138-44992638
Coord C2 exon
chr19:44992734-44992882
Length
501 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTCCTCCTTCAGAGA
3' ss Score
11.4
5' ss Seq
AAGGTTAGG
5' ss Score
6.06
Exon sequences
Seq C1 exon
GTAGATCAGGCAGCCTCCACATCTGGCCCAGCCAAGGAAATCTCCGGAAGTTCCCTGGCCTATCAATGGCCTCCACCTCAGGCGCGGTTCTAGTCTTTAAG
Seq A exon
AGAACAGACAGAGACCTGGAACTTGCCCTGAGACTGGGGGCAAGGTGACCCCTTCAGAACCCTACAGTCCTCCTGGGACCCTACACTGCTCACTCTCCATGGAATTTGCATTTGATACAGAAAGGCACGTGGTGACCCGCCCTTCCCTCTGACTTCTTACCTGTGATTCCATGGCCACACAACCCTGTGGCTCCATGTCCCCCCCATTCCATGATCCTCCATGGCCCCATGACTACTTGACCCCCATGACCTCATGACCCCTGACCCCCATGAGATCACACCCTGGACTTTGAACCCAGTGACTGCTCTTCCCCTCCCCTCCTGTGACTCTCCTGGGCTGCCCTCGGGGTCTTGTTGGTCTGAACTTCCGCAGGAAGATGTGGGGGAGGCTCTGGCCCCTCCTCTTCAGCTTTCTCACAGTAACAGCAGTGCCTGGACCCTCACTGCGGAGACCATCCCGAGAGCTAGATGCCACCCCACGGCTGACCATCTCCTATGAAG
Seq C2 exon
AGCTCTCCCAGATTCGGCACTTCAAGGGCCAAACCCAGAACTATTCAACACTGCTGCTGGAGGAGGCTTCTGAGAGGCTGCTGGTGGGGGCTCGAGGCGCCCTGTTCTCTCTCAGTGCCCGTGACATAAGAGATAGGACTCACAAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025207-'4-13,'4-11,7-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.119 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(8.1=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGATCAGGCAGCCTCCACA
R:
TTGTGAGTCCTATCTCTTATGTCACG
Band lengths:
246-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types