HsaEX1046305 @ hg38
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100969518-100973609:+
Coord C1 exon
chr10:100969518-100969591
Coord A exon
chr10:100972894-100973036
Coord C2 exon
chr10:100973547-100973609
Length
143 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGGGGGTCTTGTTAGTCT
3' ss Score
3.11
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
CCTCTCGCAGCTGGTGCTGTGGGGCCGCGGAGCCGCGCGTCGCTGTCTCTATGGCCCCGGATCCGAGCGCAAAG
Seq A exon
TCTGGGCCTCCCCAGGAAGATGTGGGGGAGGCTCTGGCCCCTCCTCCTCAGCATCCTCACAGCAACTGCAGTCCCAGGACCCTCACTGCGGAGACCGTCTAGAGAACTAGATGCCACCCCTCGGATGACCATACCCTATGAAG
Seq C2 exon
ATCCACTGGGAAGCCTCCCCAGAGATGCAAAGCAAATGTCATCAAAAAGGGAAAAACAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539_MULTIEX1-3/5=C1-5
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.357 C2=0.660
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCGCTGTCTCTATGGC
R:
TGGTTGTTTTTCCCTTTTTGATGACA
Band lengths:
100-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains