DreEX0065104 @ danRer10
Exon Skipping
Gene
ENSDARG00000076595 | sema4ga
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga [Source:ZFIN;Acc:ZDB-GENE-060503-381]
Coordinates
chr13:9325171-9393454:+
Coord C1 exon
chr13:9325171-9325666
Coord A exon
chr13:9346239-9346539
Coord C2 exon
chr13:9393306-9393454
Length
301 bp
Sequences
Splice sites
3' ss Seq
CGTTTTGTGTTGTTTTGCAGAGT
3' ss Score
10.92
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
CGGAGCAAAATGAGATTTTAAAGAGCGGCCATGCTTCTTACATTCATAATCACAATTGCGTTTTGTAGTGAGCACCAGTCCATCATGTTCTCCTCTATCTTCAACGCATTCAACACGGTGGAAAGAGTGCATGTTTTATCAGTGCTCTTTGTTTAGAACGATGGCTGTGTAAGTGTTATTGTTTTTTAGTAGATAGTGAAGGAATGCGGTCGCCGAGATATTTCCCAGGAGCCCAGATGTTTTTTTTTTCTCAATAACGATGTTTGCTGTGTGAGCGATGGAGAAGTGGCGCAGGAGGGCGGACAGTGGCTTTACCTGTGACGAGGCTCAACGCGCGCGCGCGCACACACACACGCGCAGCGCGGCGGAGCTGAGCAGAGCGACTGTCAGCCGAGTTCATAACTACACTCTTCTGGCTCCCCTCACATGGCTTTACACTGACTACTAGCAATACTTTAAAGCGTTTTTTGGATCGTTTGTGGCGAACGGAATTTGT
Seq A exon
AGTGAACACAAGGGCTGTTGTGCTTTTAAGTGAAGAAGAGTAAAACAACAGCTTTTTTGCTTACTGGAGGAGAGTGTCTAATGAGACGGCGTGAGTGACGTGCTGTATCCTAGAGAGGGGGGGGGGTGACCAGTGGCGGTGGTCTTGTGGATCTCACCCCTCCTGATGTGGAAGATGATGAACCACCGTGCATGGCTGCTGTTCCTATTGCTGCTGTATGTTGTGTCCAGTGTATGGGGTTACCCTTTCAAACCTCCGCTGGACCTGGATGTGACCCCTCGAACTACAGTCCTCTTCAAAG
Seq C2 exon
GGCTGTTGGGTTGCAGGCGCTTCAGAGGCCTGACACTGAACTACAGTTTGCTGCTGTTGGAGGAGGACGCAGACCTGCTGTACGTGGGAGCTCGAGGGGCTTTATTCGCCCTGCAGGCCAGTGACGTCTCCAGCAGCTTAGCACAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076595-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(7.7=70.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACAGTGGCTTTACCTGTG
R:
CTGTGCTAAGCTGCTGGAGAC
Band lengths:
343-644
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]