HsaEX0059863 @ hg19
Exon Skipping
Gene
ENSG00000113073 | SLC4A9
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 9 [Source:HGNC Symbol;Acc:11035]
Coordinates
chr5:139745105-139745849:+
Coord C1 exon
chr5:139745105-139745163
Coord A exon
chr5:139745419-139745607
Coord C2 exon
chr5:139745736-139745849
Length
189 bp
Sequences
Splice sites
3' ss Seq
CCTGACCCTCCTGTGTACAGGAC
3' ss Score
8.51
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GAAATGAGTCTCAATGGATAAGGACAAGGCCAAAAGACAGAGACGACATTGTAAGCATG
Seq A exon
GACTTAGGCCTGATCAATGCATCCTTGCTGCCGCCACCTGAGTGCACCCGGCAGGGAGGCCACCCTCGTGGCCCTGGCTGTCATACAGTCCCAGACATTGCCTTCTTCTCCCTTCTCCTCTTCCTTACTTCTTTCTTCTTTGCTATGGCCCTCAAGTGTGTAAAGACCAGCCGCTTCTTCCCCTCTGTG
Seq C2 exon
GTGCGCAAAGGGCTCAGCGACTTCTCCTCAGTCCTGGCCATCCTGCTCGGCTGTGGCCTTGATGCTTTCCTGGGCCTAGCCACACCAAAGCTCATGGTACCCAGAGAGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113073_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.155 A=0.063 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PD(4.3=45.0),PF0095516=HCO3_cotransp=PU(4.1=50.0)
A:
PF0095516=HCO3_cotransp=FE(12.1=100)
C2:
PF0095516=HCO3_cotransp=FE(15.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGTCTCAATGGATAAGGACAAGG
R:
TACCATGAGCTTTGGTGTGGC
Band lengths:
154-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)